If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ), 'gf_id' => 'HOM05D000967', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000967' ), 'data_identifier' => 'HOM05D000967', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000967', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13640' => 'bna', 'A01p34380' => 'bna', 'A03p41670' => 'bna', 'A03p53400' => 'bna', 'A05p28620' => 'bna', 'A06p03000' => 'bna', 'A07p32480' => 'bna', 'A07p34100' => 'bna', 'A09p26580' => 'bna', 'Aa31LG10G3710' => 'aar', 'Aa31LG6G4380' => 'aar', 'Aa31LG7G9780' => 'aar', 'Aa31LG8G7110' => 'aar', 'Aa31LG9G9960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3405' => 'aag', 'Actinidia02330' => 'ach', 'Actinidia03334' => 'ach', 'Actinidia05066' => 'ach', 'Actinidia16180' => 'ach', 'Actinidia25738' => 'ach', 'Actinidia25765' => 'ach', 'Actinidia32278' => 'ach', 'Ah.02g130630' => 'amhyb', 'Ah.03g133890' => 'amhyb', 'Ah.04g166130' => 'amhyb', 'Ah.06g182330' => 'amhyb', 'Ah.06g182340' => 'amhyb', 'Ah.09g234390' => 'amhyb', 'Ah.11g045000' => 'amhyb', 'Ah.14g087810' => 'amhyb', 'AL1G58290' => 'aly', 'AL2G26240' => 'aly', 'AL3G34020' => 'aly', 'AL4G10170' => 'aly', 'AL6G47700' => 'aly', 'AL7G31350' => 'aly', 'Aqoxy1G02873' => 'aox', 'Aqoxy1G02874' => 'aox', 'Aqoxy1G02875' => 'aox', 'Aqoxy7G02631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.90Q9AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G021HG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQET6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3NQHY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PAND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN2YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L50WS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9IQ42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK71PJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWH41Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEWK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM1B8D' => 'arhy', 'AT1G50630' => 'ath', 'AT1G67570' => 'ath', 'AT2G21080' => 'ath', 'AT3G20300' => 'ath', 'AT4G03820' => 'ath', 'AT4G22270' => 'ath', 'ATR0626G116' => 'atr', 'ATR0772G060' => 'atr', 'ATR0824G253' => 'atr', 'ATR1128G057' => 'atr', 'Atru.chr10.2309' => 'acertr', 'Atru.chr11.2276' => 'acertr', 'Atru.chr2.3525' => 'acertr', 'Atru.chr7.2693' => 'acertr', 'Atru.chr9.1034' => 'acertr', 'AUR62005579' => 'cqu', 'AUR62012770' => 'cqu', 'AUR62015872' => 'cqu', 'AUR62020351' => 'cqu', 'AUR62020650' => 'cqu', 'AUR62021888' => 'cqu', 'AUR62024151' => 'cqu', 'AUR62025897' => 'cqu', 'AUR62029662' => 'cqu', 'AUR62038723' => 'cqu', 'AUR62043828' => 'cqu', 'BcaB01g01776' => 'bca', 'BcaB03g15186' => 'bca', 'BcaB03g15367' => 'bca', 'BcaB04g19068' => 'bca', 'BcaB04g19100' => 'bca', 'BcaB04g19101' => 'bca', 'BcaB04g20661' => 'bca', 'BcaB07g33497' => 'bca', 'BcaC01g03569' => 'bca', 'BcaC02g10874' => 'bca', 'BcaC03g15383' => 'bca', 'BcaC03g18568' => 'bca', 'BcaC04g21263' => 'bca', 'BcaC04g21682' => 'bca', 'BcaC08g43230' => 'bca', 'BcaC08g43231' => 'bca', 'BcaC08g45899' => 'bca', 'BcaC09g48984' => 'bca', 'BcaC09g51145' => 'bca', 'BcaNung00802' => 'bca', 'BcaNung01701' => 'bca', 'BcaNung03748' => 'bca', 'BcaNung05069' => 'bca', 'BolC1t01602H' => 'bol', 'BolC1t04338H' => 'bol', 'BolC2t07591H' => 'bol', 'BolC3t16842H' => 'bol', 'BolC3t17386H' => 'bol', 'BolC5t33125H' => 'bol', 'BolC6t35687H' => 'bol', 'BolC6t38948H' => 'bol', 'BolC6t39171H' => 'bol', 'BolC7t45662H' => 'bol', 'BolC9t55750H' => 'bol', 'BolC9t56204H' => 'bol', 'BraA01t01307Z' => 'bra', 'BraA01t03535Z' => 'bra', 'BraA03t13320Z' => 'bra', 'BraA03t14407Z' => 'bra', 'BraA05t21738Z' => 'bra', 'BraA06t23513Z' => 'bra', 'BraA07t30872Z' => 'bra', 'BraA07t31036Z' => 'bra', 'BraA09t38231Z' => 'bra', 'C01p16520' => 'bna', 'C01p43820' => 'bna', 'C02p14640' => 'bna', 'C02p29960' => 'bna', 'C03p51020' => 'bna', 'C05p44020' => 'bna', 'C05p47980' => 'bna', 'C06p05770' => 'bna', 'C06p38560' => 'bna', 'C06p42680' => 'bna', 'C07p51710' => 'bna', 'C09p28880' => 'bna', 'C09p33700' => 'bna', 'CAN.G1186.10' => 'can', 'CAN.G337.64' => 'can', 'CAN.G352.41' => 'can', 'CAN.G492.23' => 'can', 'CANSAT01G3110' => 'cansat', 'CANSAT11G0627' => 'cansat', 'CANSAT25G1828' => 'cansat', 'CANSAT56G0613' => 'cansat', 'CANSAT80G2455' => 'cansat', 'CARHR040600' => 'chi', 'CARHR040680' => 'chi', 'CARHR060150' => 'chi', 'CARHR095950' => 'chi', 'CARHR111920' => 'chi', 'CARHR221790' => 'chi', 'CARHR229160' => 'chi', 'CARHR253450' => 'chi', 'Carub.0001s3967' => 'cru', 'Carub.0002s1391' => 'cru', 'Carub.0003s2025' => 'cru', 'Carub.0004s0011' => 'cru', 'Carub.0006s3202' => 'cru', 'Carub.0007s1905' => 'cru', 'Ca_00708_v3' => 'car', 'Ca_18061_v3' => 'car', 'Ca_22850_v3' => 'car', 'CBR_g12448' => 'cbr', 'CBR_g12452' => 'cbr', 'Cc04_g10070' => 'ccan', 'Cc05_g14230' => 'ccan', 'Cc09_g01060' => 'ccan', 'Cc11_g16660' => 'ccan', 'CDE04G1392' => 'cde', 'CDE08G1496' => 'cde', 'CDE11G0935' => 'cde', 'Cfa000133' => 'cfa', 'Cfa013305' => 'cfa', 'Cfa020285' => 'cfa', 'Ciclev10008275m.g' => 'ccl', 'Ciclev10008348m.g' => 'ccl', 'Ciclev10015536m.g' => 'ccl', 'Ciclev10023973m.g' => 'ccl', 'Ciclev10031526m.g' => 'ccl', 'CiPaw.05G114400' => 'cil', 'CiPaw.07G210100' => 'cil', 'CiPaw.09G100200' => 'cil', 'CiPaw.11G010400' => 'cil', 'CiPaw.11G194200' => 'cil', 'ClCG01G009900' => 'cla', 'ClCG08G012550' => 'cla', 'ClCG08G017260' => 'cla', 'ClCG08G017270' => 'cla', 'ClCG09G011030' => 'cla', 'COL.COLO4_12813' => 'col', 'COL.COLO4_18632' => 'col', 'COL.COLO4_31853' => 'col', 'Cpa.g.sc12.247' => 'cpa', 'Cpa.g.sc148.6' => 'cpa', 'Cpa.g.sc152.63' => 'cpa', 'Cpa.g.sc43.32' => 'cpa', 'CsaV3_1G045880' => 'csa', 'CsaV3_2G025360' => 'csa', 'CsaV3_2G031250' => 'csa', 'CsaV3_7G021170' => 'csa', 'CSS0001400' => 'camsi', 'CSS0006163' => 'camsi', 'CSS0014953' => 'camsi', 'CSS0022961' => 'camsi', 'CSS0032019' => 'camsi', 'CSS0039560' => 'camsi', 'DCAR_016412' => 'dca', 'DCAR_016650' => 'dca', 'DCAR_030881' => 'dca', 'DCAR_030882' => 'dca', 'Dinv04854' => 'din', 'Dinv10988' => 'din', 'Dinv11147' => 'din', 'Dinv22236' => 'din', 'Dinv37490' => 'din', 'Duzib168G1445' => 'dzi', 'Duzib170G0206' => 'dzi', 'Duzib213G0441' => 'dzi', 'Duzib235G0432' => 'dzi', 'Duzib248G0459' => 'dzi', 'Duzib251G0701' => 'dzi', 'ECA234G0329' => 'eca', 'ECA236G4669' => 'eca', 'ECA240G3039' => 'eca', 'ECA246G3428' => 'eca', 'ECA248G0654' => 'eca', 'ECA248G2199' => 'eca', 'EL10Ac2g03683' => 'bvu', 'EL10Ac4g07705' => 'bvu', 'EL10Ac6g13446' => 'bvu', 'EL10Ac8g20148' => 'bvu', 'EL10As4g23448' => 'bvu', 'Eucgr.B03466' => 'egr', 'Eucgr.E03959' => 'egr', 'Eucgr.F00658' => 'egr', 'Eucgr.I02070' => 'egr', 'FAN04G0324' => 'fan', 'FAN07G0525' => 'fan', 'FAN08G0080' => 'fan', 'FAN11G3086' => 'fan', 'FAN11G3182' => 'fan', 'FAN11G3882' => 'fan', 'FAN12G2154' => 'fan', 'FAN13G0229' => 'fan', 'FAN15G0172' => 'fan', 'FAN17G1603' => 'fan', 'FAN18G0710' => 'fan', 'FAN20G3145' => 'fan', 'FAN21G2969' => 'fan', 'FAN21G3327' => 'fan', 'FAN21G3703' => 'fan', 'FAN21G3757' => 'fan', 'FAN21G3995' => 'fan', 'FAN22G0859' => 'fan', 'FAN25G0389' => 'fan', 'FAN25G2344' => 'fan', 'FAN27G0124' => 'fan', 'FvH4_2g36520' => 'fve', 'FvH4_3g01210' => 'fve', 'FvH4_3g01240' => 'fve', 'FvH4_3g23460' => 'fve', 'FvH4_3g23470' => 'fve', 'FvH4_4g24190' => 'fve', 'FvH4_5g07730' => 'fve', 'Glyma.04G077200' => 'gma', 'Glyma.05G145900' => 'gma', 'Glyma.06G078300' => 'gma', 'Glyma.08G102700' => 'gma', 'Glyma.08G321700' => 'gma', 'Glyma.09G008600' => 'gma', 'Glyma.11G248600' => 'gma', 'Glyma.14G137800' => 'gma', 'Glyma.15G113000' => 'gma', 'Glyma.17G194800' => 'gma', 'Glyma.18G008600' => 'gma', 'Glyma.18G090800' => 'gma', 'Gohir.A01G083900' => 'ghi', 'Gohir.A04G012000' => 'ghi', 'Gohir.A05G311100' => 'ghi', 'Gohir.A10G010400' => 'ghi', 'Gohir.A13G136900' => 'ghi', 'Gohir.A13G181950' => 'ghi', 'Gohir.D01G070300' => 'ghi', 'Gohir.D05G311900' => 'ghi', 'Gohir.D05G374600' => 'ghi', 'Gohir.D10G010100' => 'ghi', 'Gohir.D13G141300' => 'ghi', 'Gohir.D13G185600' => 'ghi', 'Gorai.002G093000' => 'gra', 'Gorai.009G333100' => 'gra', 'Gorai.009G443500' => 'gra', 'Gorai.011G011100' => 'gra', 'Gorai.013G158300' => 'gra', 'Gorai.013G211600' => 'gra', 'GSVIVG01006686001' => 'vvi', 'GSVIVG01007273001' => 'vvi', 'GSVIVG01008496001' => 'vvi', 'GSVIVG01010336001' => 'vvi', 'GSVIVG01035570001' => 'vvi', 'GSVIVG01037714001' => 'vvi', 'HanXRQChr01g0003961' => 'han', 'HanXRQChr01g0006591' => 'han', 'HanXRQChr03g0076791' => 'han', 'HanXRQChr03g0083021' => 'han', 'HanXRQChr06g0174961' => 'han', 'HanXRQChr06g0182351' => 'han', 'HanXRQChr10g0282051' => 'han', 'HanXRQChr12g0385941' => 'han', 'HanXRQChr13g0408221' => 'han', 'HanXRQChr15g0470881' => 'han', 'HanXRQChr17g0540171' => 'han', 'HanXRQChr17g0569141' => 'han', 'Haze_06891' => 'cav', 'Haze_07249' => 'cav', 'Haze_09737' => 'cav', 'Haze_12374' => 'cav', 'Haze_21786' => 'cav', 'Hma1.2p1_0014F.1_g009770' => 'hma', 'Hma1.2p1_0298F.1_g117330' => 'hma', 'Hma1.2p1_1332F.1_g276100' => 'hma', 'HPP92_002718' => 'vpl', 'HPP92_010330' => 'vpl', 'HPP92_010420' => 'vpl', 'HPP92_010554' => 'vpl', 'Hund01968' => 'sun', 'Hund06071' => 'sun', 'Hund10204' => 'sun', 'Hund19386' => 'sun', 'Hund23202' => 'sun', 'Hund23415' => 'sun', 'Hund25443' => 'sun', 'Lalb_Chr07g0187351' => 'lal', 'Lalb_Chr14g0362331' => 'lal', 'Lalb_Chr14g0362341' => 'lal', 'Lalb_Chr18g0050291' => 'lal', 'Lalb_Chr18g0056851' => 'lal', 'Lj1A880T58' => 'lonja', 'Lj2C263G18' => 'lonja', 'Lj3A77G34' => 'lonja', 'Lj3A77T32' => 'lonja', 'Lj3A80T20' => 'lonja', 'Lj3A99G10' => 'lonja', 'Lj3C77T20' => 'lonja', 'Lj3C80T0' => 'lonja', 'Lj4g0004464' => 'lja', 'Lj4g0021478' => 'lja', 'Lj5A97T95' => 'lonja', 'Lj6g0008869' => 'lja', 'Lj6g0009354' => 'lja', 'Lj6g0011665' => 'lja', 'Lj6g0015282' => 'lja', 'Lj6g0018583' => 'lja', 'Lj8C173T4' => 'lonja', 'Lsat_1_v5_gn_0_42100' => 'lsa', 'Lsat_1_v5_gn_1_125440' => 'lsa', 'Lsat_1_v5_gn_3_29581' => 'lsa', 'Lsat_1_v5_gn_4_2941' => 'lsa', 'Lsat_1_v5_gn_4_76441' => 'lsa', 'Lsat_1_v5_gn_6_117341' => 'lsa', 'Lsat_1_v5_gn_7_114581' => 'lsa', 'Lsat_1_v5_gn_7_14441' => 'lsa', 'Lsat_1_v5_gn_9_93240' => 'lsa', 'Manes.03G000900' => 'mes', 'Manes.09G172801' => 'mes', 'Manes.13G016400' => 'mes', 'Manes.14G053900' => 'mes', 'Manes.15G066600' => 'mes', 'Manes.16G138000' => 'mes', 'Mapoly0009s0048' => 'mpo', 'Mapoly0124s0065' => 'mpo', 'Mapoly0189s0013' => 'mpo', 'MBI16_g00842_MAGBIO' => 'mbi', 'MBI16_g26177_MAGBIO' => 'mbi', 'MBI19_g03682_MAGBIO' => 'mbi', 'MBI19_g29456_MAGBIO' => 'mbi', 'MD08G1125000' => 'mdo', 'MD10G1328800' => 'mdo', 'MD11G1210400' => 'mdo', 'MD11G1210500' => 'mdo', 'MD13G1113500' => 'mdo', 'MD13G1113900' => 'mdo', 'MD14G1161500' => 'mdo', 'MD15G1104300' => 'mdo', 'MD15G1104400' => 'mdo', 'MD15G1104500' => 'mdo', 'MD15G1104600' => 'mdo', 'MD16G1112800' => 'mdo', 'MD16G1113100' => 'mdo', 'Medtr1g009230' => 'mtr', 'Medtr2g025160' => 'mtr', 'Medtr3g054010' => 'mtr', 'Medtr8g080210' => 'mtr', 'MELO3C010732.2' => 'cme', 'MELO3C011174.2' => 'cme', 'MELO3C013132.2' => 'cme', 'MELO3C021707.2' => 'cme', 'Migut.E00034' => 'egut', 'Migut.H01795' => 'egut', 'Migut.I00521' => 'egut', 'Migut.M01359' => 'egut', 'Migut.M01716' => 'egut', 'Migut.M01718' => 'egut', 'MSTRG.12995' => 'ama', 'MSTRG.14460' => 'ama', 'MSTRG.15777' => 'ama', 'MSTRG.16004' => 'ama', 'MSTRG.2453' => 'ama', 'MSTRG.6955' => 'ama', 'MSTRG.7189' => 'ama', 'Nitab4.5_0000143g0580' => 'nta', 'Nitab4.5_0000168g0080' => 'nta', 'Nitab4.5_0000984g0050' => 'nta', 'Nitab4.5_0001198g0260' => 'nta', 'Nitab4.5_0001664g0040' => 'nta', 'Nitab4.5_0002483g0010' => 'nta', 'Nitab4.5_0002826g0060' => 'nta', 'Nitab4.5_0003680g0050' => 'nta', 'Nitab4.5_0004445g0090' => 'nta', 'Nitab4.5_0004829g0110' => 'nta', 'Nitab4.5_0005078g0010' => 'nta', 'Nitab4.5_0006743g0010' => 'nta', 'Nn1g03355' => 'nnu', 'Nn1g07320' => 'nnu', 'Nn3g16532' => 'nnu', 'Nn8g41137' => 'nnu', 'Oeu005995.1' => 'oeu', 'Oeu006694.1' => 'oeu', 'Oeu007161.1' => 'oeu', 'Oeu019046.1' => 'oeu', 'Oeu020309.1' => 'oeu', 'Oeu026383.1' => 'oeu', 'Os02g0566400' => 'osa', 'Os04g0448000' => 'osa', 'Os06g0635200' => 'osa', 'Os08g0128200' => 'osa', 'Peaxi162Scf00063g00115' => 'pax', 'Peaxi162Scf00076g00118' => 'pax', 'Peaxi162Scf00089g00426' => 'pax', 'Peaxi162Scf00235g00620' => 'pax', 'Peaxi162Scf00235g00625' => 'pax', 'Peaxi162Scf00339g01012' => 'pax', 'PGR004G1054' => 'pgr', 'PGR042G1219' => 'pgr', 'PGR044G2713' => 'pgr', 'PGR102G0429' => 'pgr', 'PGR102G1657' => 'pgr', 'PGSC0003DMG400012860' => 'stu', 'PGSC0003DMG400013264' => 'stu', 'PGSC0003DMG400014415' => 'stu', 'PGSC0003DMG400015191' => 'stu', 'PGSC0003DMG400022304' => 'stu', 'PGSC0003DMG402021084' => 'stu', 'Phvul.001G259900' => 'pvu', 'Phvul.002G175600' => 'pvu', 'Phvul.006G048100' => 'pvu', 'Phvul.006G144700' => 'pvu', 'Phvul.008G158000' => 'pvu', 'Phvul.009G103200' => 'pvu', 'Potri.001G356200' => 'ptr', 'Potri.006G279200' => 'ptr', 'Potri.008G178100' => 'ptr', 'Potri.012G094700' => 'ptr', 'Potri.015G092200' => 'ptr', 'Potri.018G002700' => 'ptr', 'Pp3c13_5190' => 'ppa', 'Pp3c24_17360' => 'ppa', 'Pp3c26_13700' => 'ppa', 'Pp3c2_26190' => 'ppa', 'Pp3c8_16960' => 'ppa', 'Prupe.1G232600' => 'ppe', 'Prupe.1G456600' => 'ppe', 'Prupe.4G013300' => 'ppe', 'Prupe.4G222500' => 'ppe', 'Prupe.4G222600' => 'ppe', 'Prupe.5G154300' => 'ppe', 'Prupe.5G154400' => 'ppe', 'Psat1g177360' => 'psa', 'Psat5g172880' => 'psa', 'Psat6g033200' => 'psa', 'Psat7g079440' => 'psa', 'PSO017G2281' => 'pso', 'PSO017G4807' => 'pso', 'PSO063G4561' => 'pso', 'PSO063G6294' => 'pso', 'PSO170G4306' => 'pso', 'PSO541G3968' => 'pso', 'PSO675G9298' => 'pso', 'PSO782G3278' => 'pso', 'QL03p008224' => 'qlo', 'QL03p054656' => 'qlo', 'QL04p094998' => 'qlo', 'QL05p070064' => 'qlo', 'QL08p007346' => 'qlo', 'QL10p004516' => 'qlo', 'QL10p004551' => 'qlo', 'QL10p004612' => 'qlo', 'QL12p025805' => 'qlo', 'RcHm_v2.0_Chr4g0431031' => 'rch', 'RcHm_v2.0_Chr5g0001771' => 'rch', 'RcHm_v2.0_Chr5g0041291' => 'rch', 'RcHm_v2.0_Chr5g0041311' => 'rch', 'RcHm_v2.0_Chr6g0305351' => 'rch', 'RcHm_v2.0_Chr7g0190691' => 'rch', 'Rhsim08G0186600' => 'rsi', 'Rhsim12G0104800' => 'rsi', 'Rhsim13G0148500' => 'rsi', 'RhsimUnG0157700' => 'rsi', 'RhsimUnG0248100' => 'rsi', 'Sabra06G0216400' => 'sbr', 'Sabra08G0135900' => 'sbr', 'Sabra12G0069200' => 'sbr', 'Sabra15G0114000' => 'sbr', 'Sabra18G0003400' => 'sbr', 'Sabra18G0003800' => 'sbr', 'Sabra18G0004300' => 'sbr', 'Sabra18G0004800' => 'sbr', 'SalBow1G1200' => 'sbo', 'SalBow5G2885' => 'sbo', 'SalBow5G4632' => 'sbo', 'SalBow8G3801' => 'sbo', 'SalBow8G4441' => 'sbo', 'Sc01g0006300' => 'sci', 'Sc01g0006320' => 'sci', 'Sc04g0000790' => 'sci', 'Sc05g0009520' => 'sci', 'Sc11g0000620' => 'sci', 'Sc14g0009000' => 'sci', 'Sc16g0005790' => 'sci', 'Sc16g0005800' => 'sci', 'Sed0009047' => 'sed', 'Sed0009972' => 'sed', 'Sed0011404' => 'sed', 'Sed0016166' => 'sed', 'Sed0016238' => 'sed', 'Sed0017625' => 'sed', 'SEGI_00371' => 'sgi', 'SEGI_26596' => 'sgi', 'SEGI_33121' => 'sgi', 'SEGI_37939' => 'sgi', 'SEGI_39560' => 'sgi', 'SEGI_40173' => 'sgi', 'SGA_v2.0_scaffold171G38909' => 'sas', 'SGA_v2.0_scaffold215G42320' => 'sas', 'SGA_v2.0_scaffold4G01899' => 'sas', 'SHI26577' => 'shi', 'SMO230G0039' => 'smo', 'SMO358G0413' => 'smo', 'Solyc03g111150.4' => 'sly', 'Solyc04g045310.4' => 'sly', 'Solyc07g064900.3' => 'sly', 'Solyc10g006120.2' => 'sly', 'Solyc11g012000.2' => 'sly', 'Solyc12g014450.2' => 'sly', 'Sopen03g030300' => 'spe', 'Sopen04g016540' => 'spe', 'Sopen07g033100' => 'spe', 'Sopen10g002070' => 'spe', 'Sopen11g006810' => 'spe', 'Sopen12g007330' => 'spe', 'Sp1g37450' => 'spa', 'Sp3g18330' => 'spa', 'Sp4g00220' => 'spa', 'Sp5g22590' => 'spa', 'Sp6g04770' => 'spa', 'Sp6g04780' => 'spa', 'Sp7g20390' => 'spa', 'TAR374G1604' => 'tar', 'TAR622G0932' => 'tar', 'TAR624G1268' => 'tar', 'TAR625G0847' => 'tar', 'TAR627G0215' => 'tar', 'TAR629G1524' => 'tar', 'THA.LOC104806325' => 'tha', 'THA.LOC104808241' => 'tha', 'THA.LOC104817849' => 'tha', 'Thecc.02G274900' => 'tca', 'Thecc.03G125100' => 'tca', 'Thecc.06G230200' => 'tca', 'Thecc.07G029300' => 'tca', 'Thecc.09G002200' => 'tca', 'Thhalv10000266m.g' => 'esa', 'Thhalv10011484m.g' => 'esa', 'Thhalv10018471m.g' => 'esa', 'Thhalv10020720m.g' => 'esa', 'Thhalv10025231m.g' => 'esa', 'Thhalv10028658m.g' => 'esa', 'TPR.G12038' => 'tpr', 'TPR.G13152' => 'tpr', 'TPR.G17062' => 'tpr', 'TPR.G32245' => 'tpr', 'TPR.G40456' => 'tpr', 'TWI14G1036' => 'twi', 'TWI18G0715' => 'twi', 'TWI36G1654' => 'twi', 'TWI38G0025' => 'twi', 'TWI38G2271' => 'twi', 'TWI38G2276' => 'twi', 'TWI39G0216' => 'twi', 'TWI63G1831' => 'twi', 'unitig_21.g20394' => 'ugi', 'unitig_37.g12158' => 'ugi', 'unitig_744.g24420' => 'ugi', 'unitig_747.g21654' => 'ugi', 'unitig_748.g7952' => 'ugi', 'unitig_8.g3034' => 'ugi', 'unitig_8.g4793' => 'ugi', 'vmacro03655' => 'vma', 'vmacro09695' => 'vma', 'vmacro16130' => 'vma', 'vmacro19225' => 'vma', 'VMungo0251G2591' => 'vmu', 'VMungo0540G1043' => 'vmu', 'VMungo1309G1412' => 'vmu', 'Zm00001eb081530' => 'zma', 'Zm00001eb174560' => 'zma', 'Zm00001eb244460' => 'zma', 'Zm00001eb244470' => 'zma', 'Zm00001eb261680' => 'zma', 'Zm00001eb387500' => 'zma' ) $gf_id = 'HOM05D000967' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000967' ) $data_identifier = 'HOM05D000967' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 12, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 8, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb387500' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1